There may be other similar styles that need this type of care. You will screw things up royally if you do so. If you go this route, DO NOT edit the styles for Input or Code. If you just point to a private stylesheet, any notebooks you send or can't link to will have a missing stylesheet error. The best solution I came up with, which I use when it matters to me, is to make a custom stylesheet with a better choice of fonts, and use this as the private stylesheet for the notebooks in question. If you send a notebook to another person, they will see it with their default stylesheet. The problem is that this stylesheet will revert with each update. It is tedious, but you can change the fonts to whatever you want. You can edit the default stylesheet - it's just a notebook, after all. In that version, there was an option to keep the older default style sheet for old notebooks, and you could deliberately select the older style sheet for new documents. I raised this issue when the default style sheets changed radically in Mathematica 9.
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